Function reference • mmgenome2

Loading and exporting data Use `mmload` to load and merge metagenomic data, `mmstats` to show basic stats of the data, and `mmexport` to export the DNA sequences of binned scaffolds.
`mmload()`	Load and combine data for use with other mmgenome2 functions
`mmstats()`	Print basic statistics of metagenome data
`mmexport()`	Export DNA sequences of selected scaffolds
`mmscanbins()`	Retrieve scaffold names from all genome bins in a folder
`mmmerge_linkfiles()`	Load and merge files with mate-pair or paired-end connection information
Metagenome plotting and exploration Functions for plotting metagenomes and identifying individual genomes.
`mmplot()`	Visualise metagenomes in various ways
`mmplot_pairs()`	Plot multiple combinations of variables in a pairs plot
`mmplot_cov_profiles()`	Compare coverage profiles
`mmnetwork()`	Network plot of mate-pair or paired-end connected scaffold reads
`mmheatmap()`	Heatmap of the most abundant bins
Extracting scaffolds from metagenomes Functions for extracting individual genomes from metagenomes for further exploration or exportation with `mmexport`.
`mmextract()`	Extract all scaffolds within a selection polygon
`mmexpand_network()`	Find connections of a subset of scaffolds in a larger set of scaffolds

Reference