Since ampvis2 v2.7.6 amp_import_biom() has been implemented directly in amp_load instead. Don't use.
Reads a .biom file and converts it into an OTU table compatible with ampvis2. This enables support for both the QIIME and mothur bioinformatic pipelines, as both software tools can output data in the BIOM format (for mothur see make.biom). Utilises the biomformat package, so both the JSON and HDF5 versions of the BIOM format are supported.
amp_import_biom(...)Capture and ignore all args
A data frame
if (FALSE) {
# First import the BIOM format OTU table:
biom_otutable <- amp_import_biom("path/to/file.biom")
# Then use amp_load() with or without metadata as normal:
d <- amp_load(biom_otutable, metadata)
}