ampvis2 is an R-package to conveniently visualise and analyse 16S rRNA amplicon data in different ways.
Installing ampvis2
First, install R (3.5.x or later) and RStudio. Windows users should also install RTools. Then open RStudio as administrator (!) and run the commands below to install ampvis2 from the console:
install.packages("remotes")
remotes::install_github("kasperskytte/ampvis2", Ncpus = 4)You can also install ampvis2 into a conda environment from the bioconda channel, or use the Docker container:
docker pull quay.io/biocontainers/r-ampvis2:<tag>Get started
For a quick guide on how to use ampvis2 go to the Get Started page. Detailed documentation of all ampvis2 functions can be found at the Functions page.
Shiny app
An interactive Shiny app with some of the basic functionality of ampvis2 can be found at: https://kasperskytte.shinyapps.io/shinyampvis
